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Table 2 Advantages and disadvantages of techniques listed in the manuscript

From: Functional imaging for regenerative medicine

Technique

Advantages

Disadvantages

In vivo fluorescence imaging

• Simple, cheap, user friendly techniques • High spatial resolution (~200 nm in x,y,) with high sensitivity cameras • Development of FarRed and NIR probes allow greater tissue visualization with much less damage whilst imaging • High sensitivity (10–12 to 10–15μm/L)

• Use of a probe generally required which may have repercussions on stem cell physiology • Photo-toxicity to tissue and depth resolved imaging still an issue • Vectors employed to introduce reporter genes are still under scrutiny for safety and efficacy of use in clinical trials

QPM

• Accurate quantitative visualisation of phase changes within cells

• No depth-resolving capabilities

ODT

• Depth-resolving capabilities, resolution of up to 1 μm

• Low penetration depth (a few hundred microns), not suitable for real-time imaging (slow techniques)

DHM

• Imaging of a 3D volume with a single exposure, structural and phase imaging, and also flexibility for image processing. Resolution almost as in conventional microscopy

• Relative complexity (more complicated optical set up), limitation on coherent properties of the light source, on environmental conditions (vibrations, etc.)

SESF and srSESF

• High (nano-scale, ~10 nm demonstrated) sensitivity to structural alterations within object and super- resolution imaging

• More complicated optical set up, for example for detailed quantitative analysis of the structure an imaging spectrometer or swept light source is needed

OCT

• Improved image resolution (morphological and functional information) of depth-resolved images • Can be combined with other imaging techniques for multimodal imaging • Suitable for clinical translation

• Penetration depth is limited ~2 mm into tissue • Spatial resolution is typically limited to ~10 μm, making this technique unsuitable for cell imaging • Limited molecular sensitivity of tissue

OCM

• Enhanced penetration depth compared to standard confocal microscopy; dramatically improved resolution over OCT imaging (up to 1 micron)

• Small penetration depth (compared with OCT)

nsOCT

• Depth-resolved images with high sensitivity (~30 nm demonstrated experimentally)

• Resolution and penetration depth are approximately the same as conventional OCT

OCPM

• Quantitative phase information with high sensitivity, useful for 3D intracellular imaging

• Small depth of field

PAI

• Capable of collecting molecular and spatial information from the tissue using endogenous contrast alone • Greater sensitivity than OCT and confocal imaging • Suitable for clinical translation • The ratio of the imaging depth to the best spatial resolution is roughly a constant of 200

• Sometimes requires the use of biocompatible labelling materials such as gold or silver nanoparticles

Confocal reflectance microscopy

• High spatial resolution images achievable (diffraction limited ~200 nm) • Can work in combination with other modes of microscopy including fluorescence and OCT

• Lack of specific light reflecting probes for confocal microscopy when used in reflectance mode

Super-resolution microscopy (nanoscopy)

• Images created have a higher spatial resolution that normal diffraction limited techniques. (STED x.y resolution ~20–100 nm, PALM and STORM x.y ~20–50 nm) • Increased localization and clarity of intracellular structures due to increased resolution

• Fluorophores or fluorescent markers must be used. Potential for photo bleaching of the sample under study • Expensive equipment • Currently most super resolution techniques are not suitable for live cell imaging • Refractive index variations in the substrate can cause distortions which when translated to the nanoscale can be significant

Microcomputed tomography

• Can generate defined structural images with increased all round resolution (100 μm in x,y and z dimensions) • Suitable for clinical translation

• Exposure to ionizing radiation which can cause DNA damage • Not suitable for soft tissues

Radionuclide imaging

• Only low doses of labels need to be employed due to the high sensitivity of the probes • Good tissue penetration of the probe • Suitable for clinical translation • Fair sensitivity (10–8 to 10–9μm/L)

• Exposure to ionizing radiation which can cause DNA damage • Half-life of the probe must be considered

  1. 3D three-dimensional, DHM digital holographic microscopy, NIR near infrared, nsOCT, OCPM, OCT optical coherence tomography, OCM optical coherence microscope, ODT, PAI photoacoustic imaging, PALM photo-activated localization microscopy, QPM quantitative phase microscopy, SESF spectral encoding of the spatial frequency, srSESF, STED stimulated emission depletion, STORM stochastic optical reconstruction microscopy, nsOCT nano-sensitive optical coherence tomography, OCPM optical coherence phase microscopy, ODT optical doppler tomography, srSESF super-resolution spectral encoding of spatial frequency