Accession number | Gene name | Control patients | SCT patients | ||||||
---|---|---|---|---|---|---|---|---|---|
Affymetrix fold-expression | p value | Nanostring fold-expression | p value | Affymetrix fold-expression | p value | Nanostring fold-expression | p value | ||
Macrophages, inflammation and chemotaxis | |||||||||
NM_001040059, NM_001251 | CD68 CD68 molecule | –1.16 | 0.0740 | –1.65 | 0.3234 | –1.13 | 0.1404 | 1.00 | 0.9935 |
NM_001130046, NM_004591 | CCL20 (chemokine (C-C motif) ligand 20) | –1.78 | 0.0234 | – | – | –2.26 | 0.0032 | – | – |
NM_003955 | SOCS3 (suppressor of cytokine signaling 3) | –1.30 | 0.1987 | –6.5 | 0.0574 | –1.96 | 0.0033 | –28.96 | 0.0017 |
NM_002228 | JUN (jun proto-oncogene) | –1.65 | 0.0212 | – | – | –2.07 | 0.0021 | – | – |
NM_004887 | CXCL14 (chemokine (C-X-C motif) ligand 14) | –1.07 | 0.7539 | –1.39 | 0.6367 | –1.70 | 0.0278 | –8.48 | 0.0057 |
NM_001100812, NM_022059 | CXCL16 (chemokine (C-X-C motif) ligand 16) | –1.18 | 0.0351 | –6.37 | 0.0355 | –1.19 | 0.0342 | –16.20 | 0.0029 |
Liver regeneration, cell cycle and stem cells | |||||||||
NM_000601, NM_001010931, NM_001010932, NM_001010933, NM_001010934 | HGF (Hepatocyte growth factor) | –1.20 | 0.0529 | –3.40 | 0.0144 | –1.17 | 0.1073 | –1.32 | 0.5506 |
NM_001528.2 | HGFAC (Hepatocyte growth factor activator) | 1.10 | 0.4267 | – | – | 1.34 | 0.0267 | – | – |
NM_001170406, NM_001170407, NM_001786, NM_033379 | CDK1 (cyclin-dependent kinase 1) | –1.20 | 0.3340 | –1.19 | 0.7497 | –1.25 | 0.2553 | –1.31 | 0.6225 |
NM_031966 | CCNB1 (Cyclin B1) | –1.21 | 0.2251 | –2.17 | 0.2864 | –1.38 | 0.0558 | –2.22 | 0.2748 |
NM_001255 | CDC20 (cell division cycle 20 homolog) | –1.03 | 0.8235 | –1.45 | 0.5416 | –1.18 | 0.2489 | –1.32 | 0.6487 |
NM_005556 | CK7 (keratin 7) | 1.08 | 0.6855 | –2.48 | 0.3612 | –1.20 | 0.3464 | –12.28 | 0.0178 |
NM_002276 | CK19 (keratin 19) | –1.16 | 0.4008 | –2.33 | 0.3545 | –1.38 | 0.0900 | –13.09 | 0.0092 |
NM_002838, NM_080921, NM_080923 | PTPRC (CD45) (protein tyrosine phosphatase, receptor type, C) | –1.53 | 0.0098 | –3.61 | 0.06 | –1.04 | 0.8147 | –1.32 | 0.675 |
NM_003122 | SPINK1 (serine peptidase inhibitor, Kazal type 1) | –2.42 | 0.0591 | –6.19 | 0.1449 | –1.07 | 0.8789 | –1.28 | 0.8391 |
NM_016639 | TNFRSF12A (tumor necrosis factor receptor superfamily, member 12A) | –2.02 | 0.0003 | –11.26 | 0.0207 | –1.75 | 0.0016 | –31.33 | 0.0019 |
Fibrosis | |||||||||
NM_000088 | COL1A1 (collagen, type I, alpha 1) | –1.96 | 0.0001 | –5.41 | 0.0181 | –1.47 | 0.0137 | –1.34 | 0.6628 |
NM_000089 | COL1A2 (collagen, type I, alpha 2) | –2.26 | 0.0001 | –2.17 | 0.0216 | –1.61 | 0.0136 | –1.53 | 0.1871 |
Metabolism/function | |||||||||
NM_145740 | GSTA1 (glutathione S-transferase alpha 1) | 2.10 | 0.0258 | 2.51 | 0.1955 | 2.12 | 0.0296 | 7.85 | 0.007 |
NM_000846 | GSTA2 (glutathione S-transferase alpha 1) | 1.87 | 0.0573 | – | – | 2.72 | 0.0183 | – | – |
NM_000780.3 | CYP7A1 (cytochrome P450, family 7, subfamily A, polypeptide 1) | 2.72 | 0.0183 | – | – | 2.59 | 0.0193 | – | – |
NM_000761 | CYP1A2 (cytochrome P450, family 1, subfamily A, polypeptide 2) | 2.15 | 0.0073 | – | – | 2.24 | 0.0067 | – | – |
NM_001195728, NM_004171 | SLC1A2 (solute carrier family 1 (glial high affinity glutamate transporter), member 2) | 1.38 | 0.064 | – | – | –1.09 | 0.4444 | – | – |
NM_005577 | LPA (lipoprotein, Lp(a)) | 2.18 | 0.0070 | 27.09 | 0.0021 | 2.39 | 0.0041 | 20.77 | 0.0041 |
NM_000482 | APOA4 (apolipoprotein A-IV) | –4.56 | 0.0001 | –17.89 | 0.0053 | –5.97 | 0.0000 | –126.73 | 0.00001 |
NM_020299 | AKR1B10 (aldo-keto reductase family 1, member B10 (aldose reductase)) | –1.85 | 0.0115 | –1.61 | 0.0302 | –2.23 | 0.0024 | –2.33 | 0.0005 |
NM_001444, NR_002935 | FABP5/FABP5P3 (fatty acid binding protein 5 (psoriasis-associated)/fatty acid binding protein 5 pseudogene 3) | –1.65 | 0.0212 | – | – | –2.07 | 0.0021 | – | – |
NM_005764 | PDZK1 (PDZK1 interacting protein 1) | –1.49 | 0.0972 | –5.82 | 0.0655 | –1.73 | 0.0330 | –12.02 | 0.0124 |
NM_000636, NM_001024465, NM_001024466 | SOD2 (superoxide dismutase 2, mitochondrial) | –1.57 | 0.0193 | –1.21 | 0.2164 | –1.61 | 0.0187 | –1.44 | 0.0267 |