Skip to main content

Table 1 The sequences of primers used in the study

From: Requirement of the transcription factor YB-1 for maintaining the stemness of cancer stem cells and reverting differentiated cancer cells into cancer stem cells

YB-1

F: 5′-AGGCAGGA ACGGTTGTAGGT-3′

R: 5′-CCTTGTTCTCCTGCACCCTG-3′

GAPDH

F: 5′-GGTATCGTGGAAGGACTCATGAC-3′

R: 5′-ATGCCAGTGAGCTTCCCGTT CAG-3′

ALDH1

F: 5′-TTACCTGTCCTACTCACCGA-3′

R: 5′-CTCCTTATCTCCT TCTTCTACCT-3′

ABCG2

F: 5′-GGCCTCAGGAAGACTTATGT-3′

R: 5′-AAGGA GGTGGTGTAGCTGAT-3′

OCT-4

F: 5′-GAGCAAAACCCGGAGGAGT-3′

R: 5′-T TCTCTTTCGGGCCTGCAC-3′

Nanog

F: 5′-GCTTGCCTTGCTTTGAAGCA-3′

R: 5′-TTCTTGACTGGGACCTTGTC-3′

CDH1

F: 5′-CAAATCCAACAAAGACAAAG AAGGC-3′

R: 5′-ACACAGCGTGAGAGAAGAGAGT-3′

DSP

F: 5′-GTTTTGGGG CAGGTCAGGATT-3′

R: 5′-GGGAGGATAAGCACCGAAGAA-3′

ZO-1

F: 5′-AGC CATTCCCGAAGGAGTTGAG-3′

R: 5′-ATCACAGTGTGGTAAGCGCAGC-3′

mda-5

F: 5′-CATTAACTGTCTCATGTTCGA-3′

R: 5′-ATTGTTATCCGTTATGGT CTC-3′

mda-6

F: 5′-AGCGACCTTCCTCATCCACC-3′

R: 5′-AAGACAACTAC TCCCAGCCCCATA-3′

mda-7

F: 5′-CGGAGAGCATTCAAACAG-3′

R: 5′-GACA CAGGGAACAAACCA-3′

AP-1

F: 5′-CCCAGTGTTGTTTGTAAATAAGAGA-3′

R: 5′-CAGAAAAGAGGTTAGGGGAGTA-3′

FZD1

F: 5′-GCACTGACCAAAT GCCAATCC-3′

R: 5′-TGTGAGCCGACCAAGGTGTAT-3′

p21

F: 5′-AGCGACC TTCCTCATCCACC-3′

R: 5′-AAGACAACTACTCCCAGCCCCATA-3′

GLP-1

F: 5′-ATCTGCATCGTGGTATCCAAACTGA-3′

R: 5′-CGTGCTCGTCCATCACA AAGGT-3′

GINS1

F: 5′-CCGAAGCAAGCGGTCATACAG-3′

R: 5′-TGCCTTCA ACGAGGATGGACT-3′

Notch2

F: 5′-CCGTGTTGACTTCTGCTCTCTC-3′

R: 5′-CTACTACCCTTGGCATCCTTTG-3′

OLIG1

F: 5′-GAGGAGGAGGAAGTGGAG GAG-3′

R: 5′-CCCAGATGTACTATGCGGTTTC-3′

OLIG2

F: 5′-CGGCTGTTG ATCTTGAGACGC-3′

R: 5′-CTGGGGACAAGCTAGGAGGCA-3′

SOX8

F: 5′-CA CATCAAGACGGAGCAG-3′

R: 5′-CAGGGTAGGCACCATAGTAG-3′

ASCL1

F: 5′-GTTCAAGTCGTTGGAGTAGTT-3′

R: 5′-AAGAAGATGAGTAAGGTGGA G-3′

POU3F3

F: 5′--TCGCTCTGGACCATCTTGACA3′

R: 5′-GGCGGCTTCTAA CCCCTACCT-3′

HES6

F: 5′-AGCGACGGTAGCGTCGATGGC-3′

R: 5′-AGTGC TGGAGCTGACGGTGCG-3′

POU3F2

F: 5′-ACCTCGATGGAGGTCCGCTTT-3′

R: 5′-CTCTGGGCACCCTGTATGGCA-3′

SOX21

F: 5′-GCCATTTTGGAGCCC AGGTCG −3′

R: 5′-TGAGTCGCTGCTCGCCAATCC-3′

HEY2

F: 5′-AAAAGCAG TTGGCACAAGTCT-3′

R: 5′-ATGGCAAGAAAGAAAAGGAGA-3′

SOX5

F: 5′-T GTGAATGCTGGTAGGAGATA-3′

R: 5′-GTAGTGACCCTTACCCTGTTC-3′

RFX4

F: 5′-CGCAAGTTTTCTGGGAGGTCG-3′

R: 5′-ACGGTGGTGAACATTG TCGGC-3′

Klf15

F: 5′-AGAAACTCTTCAATCTCCTCC-3′

R: 5′-CAGCATCTT GGACTTCCTATT-3′

CITED1

F: 5′-ACTGCTTTGCGATCTTTCACC-3′

R: 5′-CC GCCAATTTATCCAACTTCT-3′

LHX2

F: 5′-AGGGAAGACCCAGAGGGTTGG-3′

R: 5′-CGCTCGGGACTTGGTTTATCA-3′

VAX2

F: 5′-GTTGAGGCGTGGGGAGG AGTT-3′

R: 5′-CCGCACCAAGCAGAAGAAAGA-3′

MYCL1

F: 5′-GGACTGG GCAGCCTCACTTTC-3′

R: 5′-CCACATCTCCATCCATCAGCAAC-3′

SALL2

F: 5′-CTTCTCCAAGGGACCCATCAC-3′

R: 5′-CCAAGCACCACGGGACTACT G-3′

SOX1

F: 5′-CGAGTTGTGCATCTTGGGGTT-3′

R: 5′-ACAGCATGATGAT GGAGACCGAC-3′

SOX2

F: 5′-AAAATCCCATCACCCACAGCAA-3′

R: 5′-AAA ATAGTCCCCCAAAAAGAAGTCC-3′

Bmi-1

F: 5′-CCCTCCACCTCTTCTTGTT TGC-3′

R: 5′-ATGACCCATTTACTGATGATTTTCG-3′

SALL4

F: 5′-TCCGCACA GCATTTCTCACAG-3′

R: 5′-AAACCCCAGCACATCAACTCG-3′

MYC

F: 5′-CG TCCTCGGATTCTCTGCTC-3′

R: 5′-CGATTTCTTCCTCATCTTCTTGTTC-3′

TCF3

F: 5′-CAGGTGGTCTTCTATCTTACTCT-3′

R: 5′-CTCAAGCAATAACTTCTCGTC-3′

ZFP57

F: 5′-CCAGCCATAGTGGGGACATCA-3′

R: 5′-GGAGGGGCTATAAAGGCAAGG-3′

FZD1 promoter

F: 5′- CGAGCTCTCGCTCCCTCTCCTCTGCCT-3′

R: 5′-CCCTCGAGGCAATCAAA TACTTTAAAGC-3′

p21 promoter

F: 5′-CGAGCTCTGGGACATGTTCCTGACGGC-3′

R: 5′- CCCTCGAGCTCAGTGTGGCCAAAGGATC-3′

GLP-1 promoter

F: 5′-CGAGCTCTCCCGG GCTGGTGGCGGGCG-3′

R: 5′-CCCTCGAGAAATGACTCCAATAATTATT-3′

GINS1 promoter

F: 5′-CGAGCTCTGCACGCCCCGCAGCTTCCT-3′

R: 5′-CCCTCGAGCGC CTCAGTCTCCCAGTGTG-3′

Notch2 promoter

F: 5′-CGAGCTCCCTGTGCACACTTTTTAT AA-3′

R: 5′-CCCTCGAGAGTGTGGGGACCTCTGTGTA-3′