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Table 1 Genes with differentially expressed exons in TSCs (15 genes) or TGCs (16 genes) are shown. The number of differentially expressed exons and the respective gene loci are also shown

From: Transcriptomic analysis reveals differential gene expression, alternative splicing, and novel exons during mouse trophoblast stem cell differentiation

Gene name

Description

(Exon)s

Expressed in

Locus

Tnnt1

Troponin T1, skeletal, slow

1, 2, 3, 5, 7

TSCs

7:4,494,599-4,526,352

Garnl3

GTPase-activating Rap/Ran-GAP domain-like

12

TSCs

2:33,026,380-33,036,319

Lmo7

LIM domain only 7

2

TSCs

14:101,793,612-101,795,315

Dnmbp

Dynamin-binding protein

1

TSCs

19:43,846,821-43,940,191

Kalrn

Kalirin RhoGEF kinase

12, 13

TSCs

16:33,966,718-34,009,600

Asic1

Acid-sensing (proton-gated) ion channel 1

6–8

TSCs

15:99,678,919-99,709,681

Lrrfip1

Leucine rich repeat (in FLII) interacting protein 1

11, 20

TSCs

1:91,122,108-91,124,774

Kif7

Kinesin family member 7

13

TSCs

7:79,696,662-79,714,284

Ceacam19

Carcinoembryonic antigen-related cell adhesion molecule 19

2–5

TSCs

7:19,877,891-19,890,114

Nlrp4c

NLR family, pyrin domain containing 4C

2, 3

TSCs

7:6,049,504-6,081,257

Mybpc

Myosin-binding protein C, cardiac

4, 5

TSCs

2:91,118,144-91,136,516

Pamr1

Peptidase domain containing associated with muscle regeneration 1

3–5

TSCs

2:102,550,012-102,643,041

Tcp11l1

T-complex 11-like protein 1

1–7

TSCs

2:104,678,017-104,712,156

Nphp1

Nephronophthisis 1 (juvenile) homolog (human)

12–15

TSCs

2:127,740,732-127,788,897

Hbp1

High mobility group box transcription factor 1

1

TSCs

12:31,926,254-31,950,535

Tmem40

Transmembrane protein 40

1

TGCs

6:115,758,238-115,760,280

P2ry2

Purinergic receptor P2Y, G-protein coupled 2

1

TGCs

7:100,996,568-101,012,866

Ptprk

Protein tyrosine phosphatase receptor type K

16

TGCs

10:28,560,239-28,563,804

Sult1e1

Sulfotransferase family 1E, member 1

5, 6

TGCs

5:87,575,600-87,592,174

Cirbp

Cold-inducible RNA-binding protein

1

TGCs

10:80,165,620-80,167,402

Chmp6

Charged multivesicular body protein 6

5

TGCs

11:119,913,441-119,919,548

Scd3

Stearoyl-coenzyme A desaturase 3

1

TGCs

19:44,203,288-44,244,016

Rlbp1

Retinaldehyde-binding protein 1

4

TGCs

7:79,379,374-79,391,552

Fanci

Fanconi anemia, complementation group 1

1

TGCs

7:79,388,339-79,404,215

Slc1a2

Solute carrier family 1 (glial high affinity glutamate transporter), member 2

2

TGCs

2:102,658,659-102,790,784

Cd44

CD44 antigen

4

TGCs

2:102,900,136-102,939,896

Ehf

ETS homologous factor

6, 7

TGCs

2:103,272,963-103,275,447

Ccdc73

Coiled-coil domain-containing protein 73

8

TGCs

2:105,011,117-105,021,056

Gpat2

Glycerol-3-phosphate acyltransferase 2, mitochondrial

8–14

TGCs

2:127,424,729-127,435,622

Fermt1

Fermitin family homolog 1

3

TGCs

2:132,904,389-132,945,906

Acan

Aggrecan core protein

1–7

TGCs

7:79,090,765-79,122,518