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Table 3 Gene set enrichment analysis of genes with at least one DMR in the promoter

From: High-efficiency generation of induced pluripotent mesenchymal stem cells from human dermal fibroblasts using recombinant proteins

Gene set name Number of genes in gene set (K) Number of genes in overlap (k) k/K False Discovery Rate q value
PILON_KLF1_TARGETS_DN 1972 107 0.0543 2.01 × 10–19
YOSHIMURA_MAPK8_TARGETS_UP 1305 73 0.0559 5.87 × 10–14
BOQUEST_STEM_CELL_UP 260 31 0.1192 1.14 × 10–13
BENPORATH_NANOG_TARGETS 988 61 0.0617 1.70 × 10–13
LIM_MAMMARY_STEM_CELL_UP 489 40 0.0818 1.73 × 10–12
WONG_ADULT_TISSUE_STEM_MODULE 721 46 0.0638 9.24 × 10–11
PASINI_SUZ12_TARGETS_DN 315 28 0.0889 9.54 × 10–10
BENPORATH_SOX2_TARGETS 734 43 0.0586 4.40 × 10–9
BENPORATH_ES_WITH_H3K27ME3 1118 53 0.0474 5.27 × 10–8
ZHANG_TLX_TARGETS_60HR_UP 293 24 0.0819 9.01 × 10–8
DANG_BOUND_BY_MYC 1103 51 0.0462 2.09 × 10–7
  1. DMR differentially methylated region