Fig. 2

Generation and characterization of ADPKD-iPSCs. (a) Immunofluorescence staining and FCM analysis of ADPKD-iPSC colonies. Expression of iPSC specific proteins (OCT4, SSEA4, TRA-1-60 and TRA-1-81) (first column) with corresponding DAPI-stained nuclei (second column) and merged images (third column). These cells were also analyzed by FCM and positive rates were tested. Bar = 50 μm. (b) Semi-quantitative PCR results showing that expressions of exogenous genes were overregulated in iPSCs after day 6 during programming. (c) qPCR showing that expressions of exogenous genes in iPSCs were silent after day 19 during programming. Data presented as mean ± standard deviation from three independent sets of experiments. **P < 0.01. (d) qPCR results showing upregulated expression of endogenous iPSC specific genes in healthy or ADPKD-iPSCs. Human embryonic stem cells (H1 ESCs) acted as a positive control. Data presented as mean ± standard deviation from three independent sets of experiments. **P < 0.01. (e) ADPKD specific iPSC colonies showing a normal 46XY karyotype. (f) Methylation status of eight CpGs analyzed (one per row) in the promoter region of both OCT4 and NANOG genes from twelve or eight randomly sequenced clones represented as 8 × 12 and 8 × 8 matrices, respectively, for both iPSCs and human fibroblast cells (HFCs). Open circles indicate the unmethylated state and dark, filled circles indicate the methylated state, which overall indicated that the loci tested are highly methylated in HFCs, while they have been reprogrammed to the unmethylated state in the iPSC colonies. (g) Genomic fingerprint analysis of TSG and TSB in both iPSCs and their corresponding HFCs. ADPKD autosomal dominant polycystic kidney disease, ESC embryonic stem cell, iPSC induced pluripotent stem cell, TSB, TSG names of family members (Color figure online)